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Bug fix: CoordinateTransformer doesn't take into consideration the elevation

lucasca requested to merge lucasca-main-patch-12189 into main

See this for details: https://pyproj4.github.io/pyproj/stable/advanced_examples.html#promote-crs-to-3d

"In PROJ 6+ you need to explicitly change your CRS to 3D if you have 2D CRS and you want the ellipsoidal height taken into account."

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